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I'm probably going to leave mine roughly where it is, on the aerobar extension and then use a couple of these short USB extension cables (http://www.ebay.co.uk/itm/400708565329) to be sacrificial as well as being flexible so a bit easier to plug stuff into rather than something fixed close to my armrests.
@hippy has indicated he's sitting at 30kph when the D1 gets hot. Admittedly the D1 was designed for touring cyclists and it gains about 15% more efficiency at slow/medium speeds due to the way the protection circuit is implemented. The alternative method I'd implemented previously in prototype units but it so rarely kicked in for touring cyclists (30kph for them is on a decent and pedalling) that it made more sense to go for higher efficiency and keep the protection for the odd occasion.
While the protection is well tested for touring cyclists I don't know how hot for how long it can go before failure (no failures so far and it does reportedly get very hot). There's a good chance for the titanium version the heat dissipation will be worse (thinner smaller case). For this reason sticky rubber mounts are included and instructions are clear to mount on the head tube facing forward.
So long as your D1 is outside the airflow at 30kph (or 10kph) will keep it fine. There are four solutions going forward;
Re: USB port, don't allow water to sit in the port (angle it down). An alternative is to use a 30cm USB extension cable and tape the join to the D1 to waterproof it. The other end of the cable can become wet and is thus sacrificial - probably it'll need replacing in a year depending on how quickly the pins corrode - (note they corrode very quickly on micro USB)
http://www.ebay.co.uk/itm/0-3m-USB-2-0-High-Speed-Cable-EXTENSION-Lead-A-PLug-to-Socket-BLACK-008100-/262209230250