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Unless you are talking about teams who got knocked out of CL qualifying, in which case the answer is more complex.
Not really, I checked back to 2007 and from the list that you posted all of those EL winners didn't playing the CL qualification...
2014/15 Seville (The 4 Spanish CL teams were Real, Atletico, Barcelona with Athletic Bilbao in the playoff for qualification).
2013/14 Seville (The 4 Spanish CL teams were Barca, real and Atletico with Real Sociedad out in qualification)
2011/12 Atletico (Barca, Real, Valencia in group stages, qualifiers were Villerreal).
2010/11 Porto (The two Portuguese CL teams were Benfica and Braga)
2007/08 Zenit (The Russian CL teams were CSKA and Spartak Moscow)[EDIT]
2006/07 Seville (4 Spanish CL teams were Barca and Real, with Valencia and Osasuna in qualification)
2005/06 Seville (4 Spanish CL teams were Barca and Real, with Real Betis and Villarreal)
2003/04 Valencia (4 Spanish CL teams were Real Madrid and Real Sociedad, with Deportivo and Celta Vigo as qualifiers)
2002/03 Porto (Portuguese CL teams were Sporting and Boavista as qualifiers)So all that you listed didn't play in the CL (group stages or qualifiers) except:-
2000/01 Libpoo shouldn't be in your list as they lost in the QFs of the Chumps Lig.
Unless you are talking about teams who got knocked out of CL qualifying, in which case the answer is more complex.