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Hmmm, okay, thanks for this. I don't have the wheel wobble as mentioned in that thread, mine run perfectly true thankfully, but i do have the off centre-ing they refer to - and funny you have the same too... Weird. Mine doesn't look bad from the rear, it's just the gap at the chain stays where it's very obvious. I'm just going to not worry about it.... (At first I removed that nut on the NDS side to get a width closer to 126mm like the frame, and at that point the wheel completely jams).
After a quick search I found this old thread talking about uncentered HED3:
https://forum.slowtwitch.com/forum/Slowtwitch_Forums_C1/Triathlon_Forum_F1/HED3_Wobble_How_much__Too_Much_-_Help_Please_P735137/
Apparently the hubs are shimmed.