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Nef-
I like Liberon wax for smaller gaps in already-finished wood. Mainly for furniture but I don't see why it wouldn't work for the floor. Might make it's way out over time and with movement, cheap and easy to give it a go though.
Rub over the gap like a crayon until it's full, brush / hoover excess then buff away with a clean rag.
dbr
While I understand the Scots meaning of the word, I had to smile at the idea of a wee gap around the toilet. Definitely something that needs sealing.