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I'm assuming the problem didn't exist with your old front wheel, and you are running the same rotor/caliper combo. If you still have the old front wheel, pop it in, see if the problem still occurs. I had a similar problem on an Equilibrium disc when I got new rotors, so ordered a different style rotor, problem solved.
Maybe take to your lbs, get them have a once over.
Can you take a pic with old wheel and new wheel in? So we can see how much tolerance (or lack of) there is.
That's an option, but I've read it will make the front wheel weaker and more likely to go out of true.